#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00601/HGDP00601.cram --algo AlignmentStat HGDP/HGDP00601/QCmetrics/HGDP00601.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	422598850	422598850	1.000000	0	422077908	0.998767	63043696545	395770886	59420779989	57830905629	0.000000	0.005115	0.004428	0.000219	151.000000	420017962	0.995120	0	0.500008	0.021509	0.000004	
SECOND_OF_PAIR	422598850	422598850	1.000000	0	420058381	0.993988	61555956816	392805846	58103711607	54225946504	0.000000	0.010607	0.009899	0.000210	151.000000	420017962	0.999904	0	0.499434	0.022982	0.000990	
PAIR	845197700	845197700	1.000000	0	842136289	0.996378	124599653361	788576732	117524491596	112056852133	0.000000	0.007828	0.007133	0.000214	151.000000	840035924	0.997506	0	0.499722	0.022244	0.000497