#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00604/HGDP00604.cram --algo AlignmentStat HGDP/HGDP00604/QCmetrics/HGDP00604.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	407265798	407265798	1.000000	0	406461365	0.998025	60658944936	378021447	56751929888	55424015069	0.000000	0.005197	0.004339	0.000235	151.000000	405147034	0.996766	0	0.499817	0.023813	0.000006	
SECOND_OF_PAIR	407265798	407265798	1.000000	0	405212088	0.994957	59353043973	375910047	55639444583	52128237203	0.000000	0.010894	0.010025	0.000224	151.000000	405147034	0.999839	0	0.499614	0.026106	0.001587	
PAIR	814531596	814531596	1.000000	0	811673453	0.996491	120011988909	753931494	112391374471	107552252272	0.000000	0.008015	0.007154	0.000230	151.000000	810294068	0.998301	0	0.499716	0.024958	0.000797