#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00608/HGDP00608.cram --algo AlignmentStat HGDP/HGDP00608/QCmetrics/HGDP00608.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	308629027	308629027	1.000000	0	308262454	0.998812	45878715093	286562204	42836398680	40954204340	0.000000	0.005699	0.004946	0.000215	151.000000	304327792	0.987236	0	0.499048	0.020053	0.000070	
SECOND_OF_PAIR	308629027	308629027	1.000000	0	304342461	0.986111	45227217393	282897814	42236890107	39453024872	0.000000	0.008266	0.007525	0.000210	151.000000	304327792	0.999952	0	0.499071	0.020862	0.000066	
PAIR	617258054	617258054	1.000000	0	612604915	0.992462	91105932486	569460018	85073288787	80407229212	0.000000	0.006974	0.006227	0.000212	151.000000	608655584	0.993553	0	0.499059	0.020455	0.000068