#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00609/HGDP00609.cram --algo AlignmentStat HGDP/HGDP00609/QCmetrics/HGDP00609.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	377618968	377618968	1.000000	0	377144766	0.998744	56221029065	352780316	52769406336	50991635191	0.000000	0.004751	0.004122	0.000209	151.000000	372680023	0.988162	0	0.498945	0.017357	0.000065	
SECOND_OF_PAIR	377618968	377618968	1.000000	0	372698930	0.986971	55521180450	348610593	52120672132	49405198519	0.000000	0.006884	0.006252	0.000203	151.000000	372680023	0.999949	0	0.498948	0.018110	0.000061	
PAIR	755237936	755237936	1.000000	0	749843696	0.992858	111742209515	701390909	104890078468	100396833710	0.000000	0.005810	0.005180	0.000206	151.000000	745360046	0.994021	0	0.498946	0.017732	0.000063