#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00610/HGDP00610.cram --algo AlignmentStat HGDP/HGDP00610/QCmetrics/HGDP00610.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	406533262	406533262	1.000000	0	405962633	0.998596	59416784455	379757588	55768737460	54307835964	0.000000	0.005146	0.004479	0.000213	151.000000	403735869	0.994515	0	0.499203	0.018293	0.000055	
SECOND_OF_PAIR	406533262	406533262	1.000000	0	403760236	0.993179	58015897549	377222694	54463840076	50984693256	0.000000	0.011433	0.010814	0.000223	151.000000	403735869	0.999940	0	0.498990	0.019858	0.000052	
PAIR	813066524	813066524	1.000000	0	809722869	0.995888	117432682004	756980282	110232577536	105292529220	0.000000	0.008252	0.007609	0.000218	151.000000	807471738	0.997220	0	0.499097	0.019073	0.000054