#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00611/HGDP00611.cram --algo AlignmentStat HGDP/HGDP00611/QCmetrics/HGDP00611.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	502507468	502507468	1.000000	0	501403017	0.997802	74872112226	467434814	70165420677	68252040896	0.000000	0.005293	0.004546	0.000222	151.000000	499277720	0.995761	0	0.499895	0.021712	0.000009	
SECOND_OF_PAIR	502507468	502507468	1.000000	0	499339319	0.993695	73033615406	464243321	68547953184	63653481289	0.000000	0.011393	0.010614	0.000213	151.000000	499277720	0.999877	0	0.499382	0.023342	0.001925	
PAIR	1005014936	1005014936	1.000000	0	1000742336	0.995749	147905727632	931678135	138713373861	131905522185	0.000000	0.008305	0.007544	0.000217	151.000000	998555440	0.997815	0	0.499639	0.022525	0.000967