#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00612/HGDP00612.cram --algo AlignmentStat HGDP/HGDP00612/QCmetrics/HGDP00612.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	412422820	412422820	1.000000	0	412071421	0.999148	61571228853	386884634	58101534062	56687457432	0.000000	0.005301	0.004639	0.000221	151.000000	410709829	0.996696	0	0.499993	0.019957	0.000003	
SECOND_OF_PAIR	412422820	412422820	1.000000	0	410741743	0.995924	60298333444	384735283	56998116094	53423908707	0.000000	0.010402	0.009715	0.000211	151.000000	410709829	0.999922	0	0.499461	0.021443	0.000642	
PAIR	824845640	824845640	1.000000	0	822813164	0.997536	121869562297	771619917	115099650156	110111366139	0.000000	0.007825	0.007153	0.000216	151.000000	821419658	0.998306	0	0.499727	0.020699	0.000323