#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00613/HGDP00613.cram --algo AlignmentStat HGDP/HGDP00613/QCmetrics/HGDP00613.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	397745339	397745339	1.000000	0	396976972	0.998068	59316046453	372457251	55926987852	54546200433	0.000000	0.004994	0.004360	0.000220	151.000000	395494509	0.996266	0	0.499987	0.020170	0.000006	
SECOND_OF_PAIR	397745339	397745339	1.000000	0	395540677	0.994457	58044190188	370186390	54813998693	51364295009	0.000000	0.010177	0.009509	0.000211	151.000000	395494509	0.999883	0	0.499460	0.021540	0.001678	
PAIR	795490678	795490678	1.000000	0	792517649	0.996263	117360236641	742643641	110740986545	105910495442	0.000000	0.007558	0.006908	0.000215	151.000000	790989018	0.998071	0	0.499724	0.020854	0.000842