#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00614/HGDP00614.cram --algo AlignmentStat HGDP/HGDP00614/QCmetrics/HGDP00614.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	444525542	444525542	1.000000	0	444008089	0.998836	66407831581	417196924	62661024315	61182928414	0.000000	0.004885	0.004269	0.000218	151.000000	442120005	0.995748	0	0.499977	0.019990	0.000002	
SECOND_OF_PAIR	444525542	444525542	1.000000	0	442161355	0.994682	64946693271	414398164	61371114479	57457519078	0.000000	0.010327	0.009668	0.000209	151.000000	442120005	0.999906	0	0.499463	0.021640	0.000893	
PAIR	889051084	889051084	1.000000	0	886169444	0.996759	131354524852	831595088	124032138794	118640447492	0.000000	0.007576	0.006940	0.000214	151.000000	884240010	0.997823	0	0.499721	0.020813	0.000448