#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00618/HGDP00618.cram --algo AlignmentStat HGDP/HGDP00618/QCmetrics/HGDP00618.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	424496452	424496452	1.000000	0	423351318	0.997302	63199669562	394452302	59230341790	57802936948	0.000000	0.005174	0.004349	0.000232	151.000000	421394970	0.995379	0	0.500019	0.024169	0.000004	
SECOND_OF_PAIR	424496452	424496452	1.000000	0	421455622	0.992837	61686279568	391640604	57921108730	54087226525	0.000000	0.011081	0.010240	0.000220	151.000000	421394970	0.999856	0	0.499377	0.025865	0.002350	
PAIR	848992904	848992904	1.000000	0	844806940	0.995069	124885949130	786092906	117151450520	111890163473	0.000000	0.008092	0.007262	0.000226	151.000000	842789940	0.997612	0	0.499699	0.025015	0.001177