#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00619/HGDP00619.cram --algo AlignmentStat HGDP/HGDP00619/QCmetrics/HGDP00619.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	410033395	410033395	1.000000	0	409674740	0.999125	61174187551	383054998	57504420670	55945256483	0.000000	0.005278	0.004509	0.000222	151.000000	407410602	0.994473	0	0.500007	0.022443	0.000003	
SECOND_OF_PAIR	410033395	410033395	1.000000	0	407446277	0.993690	59601925243	379866894	56110097048	52149612861	0.000000	0.011278	0.010493	0.000213	151.000000	407410602	0.999912	0	0.499392	0.023944	0.000645	
PAIR	820066790	820066790	1.000000	0	817121017	0.996408	120776112794	762921892	113614517718	108094869344	0.000000	0.008239	0.007464	0.000218	151.000000	814821204	0.997185	0	0.499701	0.023192	0.000324