#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00620/HGDP00620.cram --algo AlignmentStat HGDP/HGDP00620/QCmetrics/HGDP00620.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	464235761	464235761	1.000000	0	463871209	0.999215	69373638558	434468916	65265979785	63794296327	0.000000	0.004913	0.004190	0.000220	151.000000	461921409	0.995797	0	0.499927	0.020144	0.000002	
SECOND_OF_PAIR	464235761	464235761	1.000000	0	461962156	0.995102	67887024079	431630961	63964507081	60084552439	0.000000	0.010323	0.009555	0.000211	151.000000	461921409	0.999912	0	0.499532	0.021519	0.000539	
PAIR	928471522	928471522	1.000000	0	925833365	0.997159	137260662637	866099877	129230486866	123878848766	0.000000	0.007589	0.006845	0.000216	151.000000	923842818	0.997850	0	0.499730	0.020830	0.000271