#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00621/HGDP00621.cram --algo AlignmentStat HGDP/HGDP00621/QCmetrics/HGDP00621.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	414487767	414487767	1.000000	0	414054669	0.998955	61858244574	386824380	58087819245	56720470652	0.000000	0.005165	0.004417	0.000240	151.000000	412189178	0.995495	0	0.500001	0.021616	0.000003	
SECOND_OF_PAIR	414487767	414487767	1.000000	0	412229200	0.994551	60297871817	384059019	56726607699	52709428077	0.000000	0.011929	0.011159	0.000229	151.000000	412189178	0.999903	0	0.499446	0.023515	0.000744	
PAIR	828975534	828975534	1.000000	0	826283869	0.996753	122156116391	770883399	114814426944	109429898729	0.000000	0.008503	0.007748	0.000235	151.000000	824378356	0.997694	0	0.499724	0.022564	0.000374