#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00622/HGDP00622.cram --algo AlignmentStat HGDP/HGDP00622/QCmetrics/HGDP00622.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	367996662	367996662	1.000000	0	367770548	0.999386	54894162254	342850966	51470607180	50102799185	0.000000	0.005282	0.004465	0.000228	151.000000	366421398	0.996332	0	0.499952	0.022770	0.000002	
SECOND_OF_PAIR	367996662	367996662	1.000000	0	366449028	0.995794	53654830274	340780875	50398007368	47049371030	0.000000	0.010769	0.009945	0.000218	151.000000	366421398	0.999925	0	0.499385	0.024396	0.000431	
PAIR	735993324	735993324	1.000000	0	734219576	0.997590	108548992528	683631841	101868614548	97152170215	0.000000	0.007994	0.007176	0.000223	151.000000	732842796	0.998125	0	0.499669	0.023582	0.000216