#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00623/HGDP00623.cram --algo AlignmentStat HGDP/HGDP00623/QCmetrics/HGDP00623.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	428098552	428098552	1.000000	0	427829703	0.999372	63903721332	400175014	60095864781	58625560622	0.000000	0.005469	0.004678	0.000229	151.000000	426246962	0.996301	0	0.499900	0.022498	0.000002	
SECOND_OF_PAIR	428098552	428098552	1.000000	0	426278854	0.995749	62483753820	397737106	58865226006	55001551629	0.000000	0.010946	0.010137	0.000218	151.000000	426246962	0.999925	0	0.499517	0.024018	0.000420	
PAIR	856197104	856197104	1.000000	0	854108557	0.997561	126387475152	797912120	118961090787	113627112251	0.000000	0.008176	0.007379	0.000224	151.000000	852493924	0.998110	0	0.499709	0.023257	0.000211