#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00624/HGDP00624.cram --algo AlignmentStat HGDP/HGDP00624/QCmetrics/HGDP00624.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	430776093	430776093	1.000000	0	430415442	0.999163	64303830211	402153503	60383703830	58886134786	0.000000	0.005160	0.004413	0.000226	151.000000	428737158	0.996101	0	0.499964	0.021999	0.000002	
SECOND_OF_PAIR	430776093	430776093	1.000000	0	428773623	0.995351	62921321468	399629426	59173836657	55401741628	0.000000	0.010431	0.009645	0.000216	151.000000	428737158	0.999915	0	0.499447	0.023490	0.000609	
PAIR	861552186	861552186	1.000000	0	859189065	0.997257	127225151679	801782929	119557540487	114287876414	0.000000	0.007767	0.007002	0.000221	151.000000	857474316	0.998004	0	0.499706	0.022743	0.000306