#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00626/HGDP00626.cram --algo AlignmentStat HGDP/HGDP00626/QCmetrics/HGDP00626.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	447810588	447810588	1.000000	0	447463211	0.999224	66873866183	417443239	62696686206	61227135243	0.000000	0.005030	0.004269	0.000227	151.000000	445771940	0.996220	0	0.499862	0.022008	0.000002	
SECOND_OF_PAIR	447810588	447810588	1.000000	0	445808509	0.995529	65503549700	414924513	61518447390	57817827122	0.000000	0.009984	0.009182	0.000217	151.000000	445771940	0.999918	0	0.499518	0.023415	0.000560	
PAIR	895621176	895621176	1.000000	0	893271720	0.997377	132377415883	832367752	124215133596	119044962365	0.000000	0.007481	0.006702	0.000222	151.000000	891543880	0.998066	0	0.499690	0.022710	0.000281