#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00627/HGDP00627.cram --algo AlignmentStat HGDP/HGDP00627/QCmetrics/HGDP00627.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	436588892	436588892	1.000000	0	436066936	0.998804	65122919440	405944827	60960444551	59497053000	0.000000	0.005224	0.004400	0.000237	151.000000	434432341	0.996252	0	0.499898	0.024107	0.000004	
SECOND_OF_PAIR	436588892	436588892	1.000000	0	434475655	0.995160	63807882331	403496256	59826990710	56259848534	0.000000	0.010233	0.009379	0.000226	151.000000	434432341	0.999900	0	0.499477	0.025716	0.000953	
PAIR	873177784	873177784	1.000000	0	870542591	0.996982	128930801771	809441083	120787435261	115756901534	0.000000	0.007702	0.006866	0.000231	151.000000	868864682	0.998073	0	0.499688	0.024910	0.000478