#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00631/HGDP00631.cram --algo AlignmentStat HGDP/HGDP00631/QCmetrics/HGDP00631.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	408985163	408985163	1.000000	0	408845510	0.999659	61047891875	381604698	57295887075	55954723037	0.000000	0.004950	0.004130	0.000231	151.000000	407019367	0.995533	0	0.500006	0.022730	0.000001	
SECOND_OF_PAIR	408985163	408985163	1.000000	0	407042921	0.995251	59614648124	379007665	56061248291	52505702082	0.000000	0.010479	0.009644	0.000220	151.000000	407019367	0.999942	0	0.499413	0.024021	0.000179	
PAIR	817970326	817970326	1.000000	0	815888431	0.997455	120662539999	760612363	113357135366	108460425119	0.000000	0.007681	0.006857	0.000226	151.000000	814038734	0.997733	0	0.499711	0.023374	0.000090