#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00632/HGDP00632.cram --algo AlignmentStat HGDP/HGDP00632/QCmetrics/HGDP00632.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	382101546	382101546	1.000000	0	381893921	0.999457	57118426078	359686077	54030532195	52787514413	0.000000	0.004826	0.004243	0.000215	151.000000	380559971	0.996507	0	0.499963	0.018634	0.000001	
SECOND_OF_PAIR	382101546	382101546	1.000000	0	380588930	0.996041	55975859527	357617606	53020803871	49707881904	0.000000	0.010554	0.009938	0.000207	151.000000	380559971	0.999924	0	0.499498	0.019992	0.000314	
PAIR	764203092	764203092	1.000000	0	762482851	0.997749	113094285605	717303683	107051336066	102495396317	0.000000	0.007661	0.007063	0.000211	151.000000	761119942	0.998213	0	0.499731	0.019312	0.000158