#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i HGDP/HGDP00632/HGDP00632.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00632/QCmetrics/HGDP00632.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 29.886 10.539 29 4 0 0.16745 0.0016802 0.037071 0.0036648 0.011311 0.22118 0.99855 0.99529 0.9905 0.97895 0.93368 0.77995 0.49702 0.073504 0.010352 0.0059666 0.0043615 0.0033839 0.0027426 0.0022962 0.99709 25 coverage high_quality_coverage_count 0 3986952 1 2563056 2 2210883 3 2104684 4 2074314 5 2150206 6 2296709 7 2526145 8 2877965 9 3324635 10 3941039 11 4766636 12 5895506 13 7466878 14 9665559 15 12769368 16 17077850 17 22968605 18 30784768 19 40780031 20 53043401 21 67442803 22 83538691 23 100619565 24 117809594 25 134043275 26 148208739 27 159299982 28 166522112 29 169408120 30 167976443 31 162401697 32 153203021 33 141141301 34 127090032 35 111906886 36 96458083 37 81443798 38 67421717 39 54767403 40 43689710 41 34268073 42 26479977 43 20153598 44 15165077 45 11302309 46 8367529 47 6166592 48 4555066 49 3390925 50 2558000 51 1963327 52 1550253 53 1257729 54 1051924 55 902874 56 795987 57 715967 58 653168 59 602727 60 561285 61 526780 62 496725 63 470270 64 444240 65 421230 66 402309 67 381602 68 361666 69 344891 70 327419 71 312368 72 297590 73 284502 74 271312 75 259555 76 248237 77 238266 78 228358 79 218626 80 210021 81 201646 82 193273 83 184890 84 177350 85 171127 86 165216 87 158739 88 153110 89 147003 90 142538 91 137513 92 132039 93 128657 94 123680 95 120130 96 115745 97 112061 98 108692 99 105578 100 102051 101 99196 102 95874 103 94213 104 91588 105 88984 106 86320 107 84312 108 81622 109 79259 110 78279 111 76429 112 74488 113 73440 114 71422 115 70152 116 68086 117 66515 118 64921 119 63573 120 62389 121 60990 122 60099 123 58194 124 56794 125 55768 126 53839 127 52938 128 51649 129 50864 130 49276 131 48663 132 47455 133 46212 134 45615 135 44460 136 43613 137 42304 138 41297 139 40965 140 39897 141 38781 142 38319 143 37227 144 36853 145 36007 146 35055 147 34252 148 33487 149 32915 150 32277 151 31866 152 31348 153 31039 154 30661 155 30159 156 29359 157 29415 158 28641 159 28353 160 27926 161 27330 162 26659 163 26159 164 25792 165 25277 166 24794 167 24534 168 23898 169 23685 170 23212 171 22657 172 22501 173 21720 174 21487 175 21222 176 20816 177 20367 178 20030 179 20030 180 19742 181 19198 182 18974 183 18887 184 18451 185 18087 186 17835 187 17721 188 17633 189 17347 190 17130 191 16853 192 16673 193 16449 194 16274 195 16119 196 16170 197 15843 198 15478 199 15165 200 14969 201 14953 202 14906 203 14664 204 14617 205 14479 206 14277 207 14313 208 13989 209 13989 210 13887 211 13658 212 13491 213 13334 214 13130 215 13166 216 13023 217 12980 218 12846 219 12703 220 12400 221 12398 222 12225 223 12120 224 11934 225 11738 226 11591 227 11414 228 11474 229 11022 230 11020 231 10825 232 10608 233 10663 234 10452 235 10422 236 10373 237 10127 238 9974 239 9888 240 9811 241 9867 242 9630 243 9652 244 9353 245 9093 246 9234 247 8981 248 8993 249 8812 250 1610269