#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP00632/HGDP00632.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00632/QCmetrics/HGDP00632.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 1.9587 16.149 0 0 0 0.064457 0.0056322 0.086872 0.034391 0.38619 0.57755 0.13809 0.04066 0.025027 0.018956 0.015799 0.013792 0.012371 0.010523 0.009314 0.0084167 0.007721 0.0071246 0.0065408 0.0059843 0.088448 0 coverage high_quality_coverage_count 0 20372469 1 1536206 2 385375 3 227938 4 153309 5 112390 6 85265 7 69234 8 57090 9 45543 10 39370 11 32321 12 27881 13 23773 14 20131 15 18297 16 16666 17 14697 18 13199 19 11764 20 10974 21 10212 22 9395 23 8503 24 8357 25 7654 26 7007 27 6633 28 6322 29 5969 30 5410 31 5128 32 4841 33 4653 34 4529 35 4396 36 4093 37 3847 38 3561 39 3225 40 3189 41 3092 42 3079 43 2970 44 2796 45 2934 46 2736 47 2657 48 2544 49 2583 50 2361 51 2326 52 2235 53 2292 54 2151 55 2097 56 2055 57 1909 58 1948 59 1835 60 1808 61 1692 62 1719 63 1713 64 1646 65 1636 66 1549 67 1561 68 1560 69 1559 70 1496 71 1495 72 1357 73 1449 74 1463 75 1441 76 1392 77 1283 78 1376 79 1344 80 1343 81 1484 82 1416 83 1388 84 1432 85 1388 86 1369 87 1280 88 1365 89 1335 90 1288 91 1252 92 1312 93 1345 94 1309 95 1374 96 1297 97 1344 98 1344 99 1288 100 1314 101 1322 102 1282 103 1209 104 1256 105 1221 106 1263 107 1153 108 1200 109 1061 110 1098 111 1126 112 1063 113 1046 114 1021 115 1007 116 941 117 953 118 947 119 947 120 891 121 939 122 889 123 902 124 867 125 867 126 859 127 824 128 825 129 783 130 788 131 814 132 753 133 830 134 789 135 772 136 843 137 820 138 799 139 832 140 789 141 844 142 854 143 811 144 850 145 823 146 772 147 831 148 767 149 758 150 777 151 710 152 740 153 732 154 769 155 760 156 747 157 703 158 701 159 688 160 707 161 663 162 673 163 648 164 581 165 612 166 588 167 616 168 597 169 545 170 594 171 532 172 532 173 497 174 465 175 509 176 541 177 471 178 488 179 481 180 449 181 462 182 461 183 407 184 395 185 406 186 364 187 385 188 340 189 310 190 302 191 323 192 280 193 296 194 328 195 282 196 304 197 283 198 289 199 286 200 261 201 276 202 284 203 269 204 249 205 252 206 245 207 252 208 255 209 270 210 231 211 196 212 221 213 237 214 233 215 232 216 246 217 212 218 231 219 224 220 187 221 237 222 219 223 242 224 227 225 230 226 205 227 229 228 198 229 223 230 229 231 192 232 219 233 216 234 209 235 215 236 213 237 196 238 222 239 196 240 186 241 214 242 181 243 181 244 196 245 181 246 220 247 190 248 185 249 188 250 57511