#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00634/HGDP00634.cram --algo AlignmentStat HGDP/HGDP00634/QCmetrics/HGDP00634.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	367401439	367401439	1.000000	0	367210995	0.999482	54842987729	344070167	51646822363	50249900539	0.000000	0.005180	0.004521	0.000224	151.000000	365766115	0.996065	0	0.499808	0.020874	0.000002	
SECOND_OF_PAIR	367401439	367401439	1.000000	0	365791692	0.995619	53597199346	341855963	50544433414	47111086410	0.000000	0.010816	0.010135	0.000215	151.000000	365766115	0.999930	0	0.499567	0.022358	0.000336	
PAIR	734802878	734802878	1.000000	0	733002687	0.997550	108440187075	685926130	102191255777	97360986949	0.000000	0.007966	0.007297	0.000220	151.000000	731532230	0.997994	0	0.499688	0.021615	0.000169