#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00635/HGDP00635.cram --algo AlignmentStat HGDP/HGDP00635/QCmetrics/HGDP00635.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	397389333	397389333	1.000000	0	397001740	0.999025	59351836215	373734627	56124336141	54720010038	0.000000	0.005340	0.004726	0.000218	151.000000	395389243	0.995938	0	0.500007	0.019419	0.000004	
SECOND_OF_PAIR	397389333	397389333	1.000000	0	395421906	0.995049	58021310249	371292931	54945250182	51255669808	0.000000	0.010971	0.010327	0.000209	151.000000	395389243	0.999917	0	0.499478	0.020832	0.000750	
PAIR	794778666	794778666	1.000000	0	792423646	0.997037	117373146464	745027558	111069586323	105975679846	0.000000	0.008123	0.007497	0.000214	151.000000	790778486	0.997924	0	0.499743	0.020124	0.000377