#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00637/HGDP00637.cram --algo AlignmentStat HGDP/HGDP00637/QCmetrics/HGDP00637.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	427227750	427227750	1.000000	0	426801160	0.999001	63797865799	400698364	60177825026	58768899589	0.000000	0.004894	0.004245	0.000223	151.000000	425078597	0.995964	0	0.499963	0.020823	0.000002	
SECOND_OF_PAIR	427227750	427227750	1.000000	0	425115441	0.995056	62413065574	398125645	58968570242	55290317074	0.000000	0.010168	0.009480	0.000214	151.000000	425078597	0.999913	0	0.499471	0.022439	0.000754	
PAIR	854455500	854455500	1.000000	0	851916601	0.997029	126210931373	798824009	119146395268	114059216663	0.000000	0.007502	0.006836	0.000218	151.000000	850157194	0.997935	0	0.499718	0.021629	0.000378