#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00638/HGDP00638.cram --algo AlignmentStat HGDP/HGDP00638/QCmetrics/HGDP00638.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	400623584	400623584	1.000000	0	400347348	0.999310	59870359984	377674640	56726133855	55371175306	0.000000	0.004902	0.004292	0.000219	151.000000	398911219	0.996413	0	0.499911	0.018488	0.000002	
SECOND_OF_PAIR	400623584	400623584	1.000000	0	398943199	0.995806	58745458628	375508989	55733345501	52486724218	0.000000	0.009727	0.009086	0.000211	151.000000	398911219	0.999920	0	0.499574	0.019669	0.000477	
PAIR	801247168	801247168	1.000000	0	799290547	0.997558	118615818612	753183629	112459479356	107857899524	0.000000	0.007292	0.006668	0.000215	151.000000	797822438	0.998163	0	0.499743	0.019078	0.000240