#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00639/HGDP00639.cram --algo AlignmentStat HGDP/HGDP00639/QCmetrics/HGDP00639.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	352382996	352382996	1.000000	0	351966644	0.998818	52589451396	329580584	49481940746	48153776080	0.000000	0.005126	0.004433	0.000217	151.000000	350321283	0.995325	0	0.499996	0.020682	0.000005	
SECOND_OF_PAIR	352382996	352382996	1.000000	0	350356349	0.994249	51363915345	327185991	48396386230	45164181964	0.000000	0.010624	0.009895	0.000209	151.000000	350321283	0.999900	0	0.499406	0.022182	0.000942	
PAIR	704765992	704765992	1.000000	0	702322993	0.996534	103953366741	656766575	97878326976	93317958044	0.000000	0.007843	0.007133	0.000213	151.000000	700642566	0.997607	0	0.499702	0.021430	0.000474