#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00641/HGDP00641.cram --algo AlignmentStat HGDP/HGDP00641/QCmetrics/HGDP00641.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	406710760	406710760	1.000000	0	406123989	0.998557	60693018650	379359541	56974244815	55629438693	0.000000	0.005070	0.004339	0.000221	151.000000	404456305	0.995894	0	0.499899	0.021117	0.000005	
SECOND_OF_PAIR	406710760	406710760	1.000000	0	404503346	0.994573	59300441045	376863614	55757978810	52101429827	0.000000	0.011151	0.010392	0.000212	151.000000	404456305	0.999884	0	0.499551	0.022775	0.001161	
PAIR	813421520	813421520	1.000000	0	810627335	0.996565	119993459695	756223155	112732223625	107730868520	0.000000	0.008075	0.007333	0.000217	151.000000	808912610	0.997885	0	0.499726	0.021945	0.000583