#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00643/HGDP00643.cram --algo AlignmentStat HGDP/HGDP00643/QCmetrics/HGDP00643.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	420894656	420894656	1.000000	0	420620175	0.999348	62871587768	395811521	59445937103	58002857968	0.000000	0.005244	0.004616	0.000219	151.000000	419038067	0.996239	0	0.499985	0.019556	0.000002	
SECOND_OF_PAIR	420894656	420894656	1.000000	0	419068913	0.995662	61566924460	393415837	58296234120	54611006531	0.000000	0.010423	0.009770	0.000210	151.000000	419038067	0.999926	0	0.499483	0.020876	0.000442	
PAIR	841789312	841789312	1.000000	0	839689088	0.997505	124438512228	789227358	117742171223	112613864499	0.000000	0.007806	0.007168	0.000215	151.000000	838076134	0.998079	0	0.499735	0.020215	0.000222