#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00645/HGDP00645.cram --algo AlignmentStat HGDP/HGDP00645/QCmetrics/HGDP00645.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	391617541	391617541	1.000000	0	391420525	0.999497	58509546173	366198883	55003043253	53728582925	0.000000	0.004948	0.004211	0.000222	151.000000	390008989	0.996394	0	0.499907	0.020375	0.000001	
SECOND_OF_PAIR	391617541	391617541	1.000000	0	390037084	0.995964	57344461041	364089384	54002730862	50844195621	0.000000	0.009735	0.008957	0.000213	151.000000	390008989	0.999928	0	0.499515	0.021780	0.000308	
PAIR	783235082	783235082	1.000000	0	781457609	0.997731	115854007214	730288267	109005774115	104572778546	0.000000	0.007317	0.006562	0.000218	151.000000	780017978	0.998158	0	0.499711	0.021076	0.000154