#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP00645/HGDP00645.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00645/QCmetrics/HGDP00645.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 18.898 24.885 15 3 0 0.10836 0.0017425 0.054426 0.0090162 0.33997 0.51352 0.99849 0.99212 0.90869 0.54524 0.18144 0.06452 0.044247 0.036056 0.031218 0.026815 0.0229 0.019901 0.017769 0.015995 0.99065 20 coverage high_quality_coverage_count 0 35792 1 26118 2 28724 3 36954 4 58720 5 102720 6 186940 7 325447 8 536616 9 820263 10 1142648 11 1490242 12 1798155 13 2026620 14 2132807 15 2121592 16 1995575 17 1773024 18 1497017 19 1211867 20 938652 21 702835 22 511861 23 359606 24 250535 25 172895 26 118992 27 84005 28 59451 29 43848 30 33898 31 27111 32 23219 33 19793 34 17788 35 16295 36 15190 37 13925 38 13516 39 12862 40 12479 41 12172 42 11751 43 11471 44 11290 45 11289 46 11097 47 11008 48 10991 49 10812 50 10792 51 10520 52 10559 53 10557 54 10451 55 10358 56 10166 57 10419 58 10052 59 10194 60 10027 61 9829 62 9868 63 9656 64 9369 65 9084 66 9014 67 8966 68 8522 69 8202 70 8021 71 7872 72 7506 73 7423 74 7271 75 7116 76 6817 77 6575 78 6244 79 6031 80 5691 81 5594 82 5232 83 5047 84 5114 85 4932 86 4780 87 4802 88 4699 89 4511 90 4470 91 4449 92 4438 93 4186 94 4313 95 4161 96 4005 97 4122 98 3869 99 3910 100 3609 101 3566 102 3534 103 3504 104 3457 105 3419 106 3298 107 3385 108 3235 109 3179 110 3066 111 2985 112 3009 113 2969 114 2938 115 2957 116 2824 117 2867 118 2735 119 2865 120 2831 121 2836 122 2764 123 2765 124 2698 125 2728 126 2591 127 2699 128 2659 129 2513 130 2489 131 2392 132 2352 133 2184 134 2260 135 2238 136 2136 137 2113 138 2065 139 2098 140 1970 141 1959 142 2017 143 1878 144 1940 145 1900 146 1793 147 1839 148 1835 149 1732 150 1757 151 1712 152 1662 153 1679 154 1525 155 1488 156 1446 157 1447 158 1404 159 1383 160 1302 161 1287 162 1292 163 1221 164 1214 165 1197 166 1155 167 1178 168 1195 169 1180 170 1105 171 1106 172 990 173 1029 174 1017 175 1025 176 1014 177 1043 178 968 179 933 180 902 181 860 182 826 183 807 184 825 185 793 186 759 187 723 188 716 189 662 190 712 191 630 192 675 193 618 194 637 195 635 196 623 197 620 198 637 199 607 200 548 201 568 202 500 203 576 204 515 205 541 206 565 207 440 208 523 209 517 210 512 211 530 212 475 213 509 214 454 215 494 216 459 217 472 218 448 219 428 220 455 221 463 222 426 223 424 224 416 225 412 226 424 227 379 228 372 229 398 230 406 231 386 232 404 233 344 234 376 235 398 236 357 237 371 238 355 239 343 240 367 241 357 242 377 243 381 244 357 245 384 246 350 247 333 248 375 249 382 250 172529