#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00655/HGDP00655.cram --algo AlignmentStat HGDP/HGDP00655/QCmetrics/HGDP00655.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	382987259	382987259	1.000000	0	382861042	0.999670	57204830288	356031226	53405037937	51524806793	0.000000	0.004803	0.004062	0.000226	151.000000	381617722	0.996753	0	0.497140	0.023124	0.000123	
SECOND_OF_PAIR	382987259	382987259	1.000000	0	381638174	0.996477	56678082208	354354456	52889550773	50262988346	0.000000	0.006624	0.005863	0.000225	151.000000	381617722	0.999946	0	0.497315	0.023723	0.000118	
PAIR	765974518	765974518	1.000000	0	764499216	0.998074	113882912496	710385682	106294588710	101787795139	0.000000	0.005709	0.004958	0.000225	151.000000	763235444	0.998347	0	0.497228	0.023423	0.000121