#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00663/HGDP00663.cram --algo AlignmentStat HGDP/HGDP00663/QCmetrics/HGDP00663.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	427133976	427133976	1.000000	0	426675809	0.998927	63834968146	400765284	60217983321	58837749597	0.000000	0.004752	0.004149	0.000218	151.000000	424322389	0.994484	0	0.499985	0.017960	0.000003	
SECOND_OF_PAIR	427133976	427133976	1.000000	0	424356264	0.993497	62325605571	397578673	58891917362	55299854785	0.000000	0.010426	0.009787	0.000209	151.000000	424322389	0.999920	0	0.499572	0.019168	0.000877	
PAIR	854267952	854267952	1.000000	0	851032073	0.996212	126160573717	798343957	119109900683	114137604382	0.000000	0.007555	0.006937	0.000214	151.000000	848644778	0.997195	0	0.499779	0.018563	0.000440