#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00664/HGDP00664.cram --algo AlignmentStat HGDP/HGDP00664/QCmetrics/HGDP00664.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	427989333	427989333	1.000000	0	427561137	0.999000	63939044947	400579334	60172154850	58675210916	0.000000	0.004931	0.004288	0.000219	151.000000	425727025	0.995710	0	0.500062	0.019151	0.000003	
SECOND_OF_PAIR	427989333	427989333	1.000000	0	425758657	0.994788	62467255515	397890765	58884636962	55048460905	0.000000	0.010643	0.009979	0.000211	151.000000	425727025	0.999926	0	0.499459	0.020381	0.000824	
PAIR	855978666	855978666	1.000000	0	853319794	0.996894	126406300462	798470099	119056791812	113723671821	0.000000	0.007753	0.007103	0.000215	151.000000	851454050	0.997814	0	0.499761	0.019765	0.000414