#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00670/HGDP00670.cram --algo AlignmentStat HGDP/HGDP00670/QCmetrics/HGDP00670.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	512755047	512755047	1.000000	0	511648100	0.997841	76470898618	477741415	71730187933	69863735453	0.000000	0.005456	0.004711	0.000217	151.000000	509846937	0.996480	0	0.500001	0.020678	0.000008	
SECOND_OF_PAIR	512755047	512755047	1.000000	0	509893861	0.994420	74737996868	474935177	70245267927	65309251366	0.000000	0.011628	0.010847	0.000204	151.000000	509846937	0.999908	0	0.499502	0.022450	0.001905	
PAIR	1025510094	1025510094	1.000000	0	1021541961	0.996131	151208895486	952676592	141975455860	135172986819	0.000000	0.008506	0.007747	0.000211	151.000000	1019693874	0.998191	0	0.499752	0.021563	0.000956