#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00671/HGDP00671.cram --algo AlignmentStat HGDP/HGDP00671/QCmetrics/HGDP00671.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	424207262	424207262	1.000000	0	423903704	0.999284	63180798915	395441689	59233281536	57344355888	0.000000	0.005940	0.005168	0.000218	151.000000	421513903	0.994362	0	0.499970	0.021320	0.000002	
SECOND_OF_PAIR	424207262	424207262	1.000000	0	421541950	0.993717	61029342743	391991349	57343784215	52181089208	1.000000	0.014089	0.013327	0.000207	151.000000	421513903	0.999933	0	0.499438	0.023003	0.000513	
PAIR	848414524	848414524	1.000000	0	845445654	0.996501	124210141658	787433038	116577065751	109525445096	0.000000	0.009944	0.009181	0.000213	151.000000	843027806	0.997140	0	0.499705	0.022159	0.000258