#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00672/HGDP00672.cram --algo AlignmentStat HGDP/HGDP00672/QCmetrics/HGDP00672.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	391118176	391118176	1.000000	0	390834253	0.999274	58362067561	366217503	54973233552	53414798984	0.000000	0.005771	0.005067	0.000223	151.000000	389371240	0.996257	0	0.499966	0.022297	0.000002	
SECOND_OF_PAIR	391118176	391118176	1.000000	0	389397800	0.995601	56849593367	363868542	53652738402	49609384629	0.000000	0.012337	0.011632	0.000210	151.000000	389371240	0.999932	0	0.499508	0.023951	0.000517	
PAIR	782236352	782236352	1.000000	0	780232053	0.997438	115211660928	730086045	108625971954	103024183613	0.000000	0.009010	0.008309	0.000216	151.000000	778742480	0.998091	0	0.499737	0.023122	0.000260