#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00673/HGDP00673.cram --algo AlignmentStat HGDP/HGDP00673/QCmetrics/HGDP00673.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	429567391	429567391	1.000000	0	428755531	0.998110	64126019815	403694299	60634382525	59088447478	0.000000	0.005195	0.004581	0.000212	151.000000	427226627	0.996434	0	0.499996	0.018146	0.000005	
SECOND_OF_PAIR	429567391	429567391	1.000000	0	427262493	0.994634	62571891139	401280106	59262279154	54731679730	0.000000	0.012248	0.011625	0.000200	151.000000	427226627	0.999916	0	0.499577	0.019589	0.001627	
PAIR	859134782	859134782	1.000000	0	856018024	0.996372	126697910954	804974405	119896661679	113820127208	0.000000	0.008678	0.008063	0.000206	151.000000	854453254	0.998172	0	0.499787	0.018866	0.000816