#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00675/HGDP00675.cram --algo AlignmentStat HGDP/HGDP00675/QCmetrics/HGDP00675.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	478326398	478326398	1.000000	0	477800270	0.998900	71439246206	446581718	67068262019	65403748229	0.000000	0.005394	0.004714	0.000216	151.000000	475986610	0.996204	0	0.500000	0.019775	0.000004	
SECOND_OF_PAIR	478326398	478326398	1.000000	0	476032756	0.995205	69848190589	443804882	65689965116	61325334233	0.000000	0.010958	0.010233	0.000208	151.000000	475986610	0.999903	0	0.499488	0.021158	0.000840	
PAIR	956652796	956652796	1.000000	0	953833026	0.997052	141287436795	890386600	132758227135	126729082462	0.000000	0.008144	0.007445	0.000212	151.000000	951973220	0.998050	0	0.499745	0.020465	0.000422