#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP00675/HGDP00675.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00675/QCmetrics/HGDP00675.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 18.824 5.7256 19 3 0 0.16253 0.0019265 0.038436 0.0020525 7.3516e-05 0.20502 0.99851 0.99425 0.97295 0.81488 0.42519 0.1165 0.020839 0.0031721 0.0016034 0.00099874 0.00071022 0.00050147 0.00034631 0.00024109 0.99525 23 coverage high_quality_coverage_count 0 225966 1 148028 2 146448 3 161233 4 193706 5 246898 6 341133 7 516258 8 819798 9 1315372 10 2075961 11 3156245 12 4555320 13 6229388 14 8027502 15 9797583 16 11331336 17 12420913 18 12920102 19 12807289 20 12130218 21 10971112 22 9528598 23 7946241 24 6379890 25 4943186 26 3709005 27 2693324 28 1900882 29 1305544 30 883031 31 590531 32 392213 33 260109 34 178521 35 124872 36 90437 37 68546 38 54463 39 44622 40 37866 41 33313 42 29892 43 26159 44 23627 45 21331 46 19185 47 17300 48 15713 49 14231 50 13194 51 12017 52 11002 53 10001 54 9199 55 8346 56 7837 57 7216 58 6793 59 6373 60 5855 61 5352 62 4930 63 4609 64 4308 65 4016 66 3755 67 3792 68 3658 69 3613 70 3704 71 3515 72 3492 73 3325 74 3193 75 3098 76 2995 77 2976 78 2757 79 2698 80 2626 81 2569 82 2526 83 2374 84 2401 85 2301 86 2313 87 2229 88 2133 89 2131 90 1888 91 1886 92 1809 93 1778 94 1594 95 1593 96 1473 97 1336 98 1399 99 1249 100 1251 101 1164 102 1028 103 1047 104 992 105 946 106 913 107 856 108 738 109 687 110 678 111 660 112 689 113 638 114 608 115 587 116 578 117 573 118 523 119 467 120 451 121 457 122 465 123 414 124 417 125 407 126 379 127 401 128 382 129 344 130 307 131 302 132 314 133 272 134 309 135 266 136 225 137 272 138 269 139 241 140 256 141 264 142 229 143 237 144 233 145 218 146 220 147 189 148 210 149 222 150 202 151 189 152 195 153 191 154 212 155 190 156 175 157 160 158 190 159 168 160 189 161 148 162 141 163 155 164 139 165 134 166 139 167 108 168 136 169 121 170 139 171 150 172 150 173 134 174 143 175 138 176 125 177 117 178 141 179 113 180 136 181 133 182 132 183 126 184 121 185 141 186 136 187 120 188 118 189 125 190 121 191 113 192 118 193 98 194 115 195 93 196 93 197 97 198 97 199 87 200 64 201 83 202 51 203 61 204 66 205 88 206 84 207 75 208 74 209 92 210 87 211 86 212 102 213 80 214 78 215 82 216 62 217 52 218 65 219 58 220 51 221 45 222 41 223 40 224 42 225 32 226 32 227 23 228 36 229 28 230 30 231 43 232 44 233 44 234 58 235 41 236 43 237 47 238 50 239 46 240 40 241 39 242 33 243 42 244 39 245 36 246 24 247 37 248 35 249 33 250 2262