#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP00675/HGDP00675.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00675/QCmetrics/HGDP00675.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 23.94 27.354 19 4 0 0.10084 0.0018969 0.056703 0.0077574 0.28923 0.45643 0.99869 0.99509 0.975 0.83322 0.48115 0.18458 0.077174 0.045339 0.038257 0.034419 0.031432 0.028646 0.026016 0.023446 0.99572 24 coverage high_quality_coverage_count 0 30989 1 18724 2 18909 3 20602 4 26729 5 35009 6 50455 7 76775 8 121549 9 191230 10 296301 11 442699 12 631105 13 864737 14 1116194 15 1366381 16 1581309 17 1733348 18 1818445 19 1822199 20 1745220 21 1608861 22 1426082 23 1221271 24 1008361 25 809872 26 630256 27 478398 28 356722 29 263506 30 191824 31 140723 32 104211 33 77939 34 60452 35 47832 36 39882 37 33859 38 29598 39 26150 40 23948 41 21651 42 19954 43 18151 44 16773 45 15447 46 14118 47 13224 48 12330 49 11791 50 11020 51 10602 52 9793 53 9522 54 8968 55 8569 56 8430 57 8160 58 8012 59 7654 60 7376 61 7246 62 7272 63 7091 64 7015 65 7041 66 6812 67 6946 68 7051 69 6742 70 6761 71 6632 72 6603 73 6424 74 6501 75 6594 76 6546 77 6741 78 6526 79 6514 80 6425 81 6261 82 6369 83 6191 84 6104 85 6205 86 6067 87 6162 88 6173 89 6224 90 6097 91 6193 92 6262 93 6167 94 6212 95 6061 96 6001 97 6054 98 5873 99 5806 100 5957 101 5814 102 5910 103 5786 104 5807 105 5734 106 5882 107 5771 108 5662 109 5401 110 5613 111 5529 112 5589 113 5531 114 5496 115 5523 116 5808 117 5605 118 5962 119 5654 120 5613 121 5497 122 5589 123 5516 124 5456 125 5368 126 5379 127 5082 128 5058 129 4902 130 4747 131 4648 132 4506 133 4448 134 4312 135 4189 136 4081 137 4071 138 3931 139 3823 140 3496 141 3558 142 3425 143 3256 144 3156 145 3053 146 3037 147 2852 148 2783 149 2718 150 2738 151 2536 152 2476 153 2557 154 2394 155 2480 156 2324 157 2269 158 2210 159 2154 160 2076 161 2085 162 1934 163 1931 164 1853 165 1905 166 1695 167 1648 168 1612 169 1624 170 1553 171 1429 172 1490 173 1525 174 1429 175 1350 176 1371 177 1363 178 1320 179 1332 180 1215 181 1243 182 1195 183 1188 184 1205 185 1134 186 1138 187 1158 188 1106 189 1075 190 1063 191 1017 192 971 193 929 194 981 195 944 196 974 197 970 198 997 199 999 200 985 201 960 202 909 203 947 204 922 205 927 206 928 207 921 208 820 209 890 210 875 211 878 212 896 213 840 214 765 215 833 216 867 217 799 218 801 219 783 220 804 221 807 222 801 223 807 224 789 225 778 226 770 227 760 228 732 229 732 230 706 231 693 232 705 233 754 234 715 235 646 236 695 237 721 238 652 239 690 240 638 241 592 242 591 243 578 244 600 245 625 246 588 247 577 248 548 249 577 250 196223