#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00677/HGDP00677.cram --algo AlignmentStat HGDP/HGDP00677/QCmetrics/HGDP00677.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	425345257	425345257	1.000000	0	424869130	0.998881	63494623486	397273300	59653689851	58245662807	0.000000	0.004943	0.004264	0.000222	151.000000	423164509	0.995988	0	0.499897	0.020799	0.000003	
SECOND_OF_PAIR	425345257	425345257	1.000000	0	423206816	0.994972	62134795665	394732746	58467027398	54846845897	0.000000	0.010143	0.009421	0.000213	151.000000	423164509	0.999900	0	0.499487	0.022241	0.000878	
PAIR	850690514	850690514	1.000000	0	848075946	0.996927	125629419151	792006046	118120717249	113092508704	0.000000	0.007514	0.006816	0.000218	151.000000	846329018	0.997940	0	0.499693	0.021518	0.000441