#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00679/HGDP00679.cram --algo AlignmentStat HGDP/HGDP00679/QCmetrics/HGDP00679.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	397948797	397948797	1.000000	0	397147052	0.997985	59335828020	372122932	55871715780	54374307919	0.000000	0.005082	0.004434	0.000217	151.000000	395168871	0.995019	0	0.499913	0.020985	0.000007	
SECOND_OF_PAIR	397948797	397948797	1.000000	0	395218681	0.993140	57987722285	369328705	54667829193	51071363423	0.000000	0.010462	0.009784	0.000208	151.000000	395168871	0.999874	0	0.499465	0.022279	0.001725	
PAIR	795897594	795897594	1.000000	0	792365733	0.995562	117323550305	741451637	110539544973	105445671342	0.000000	0.007741	0.007080	0.000213	151.000000	790337742	0.997441	0	0.499690	0.021631	0.000866