#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00680/HGDP00680.cram --algo AlignmentStat HGDP/HGDP00680/QCmetrics/HGDP00680.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	401201768	401201768	1.000000	0	400664591	0.998661	59903863715	375722592	56435622113	55127562859	0.000000	0.004869	0.004241	0.000218	151.000000	398763194	0.995254	0	0.499936	0.019655	0.000005	
SECOND_OF_PAIR	401201768	401201768	1.000000	0	398805569	0.994027	58577211534	373060634	55262067019	51821501850	0.000000	0.010431	0.009767	0.000209	151.000000	398763194	0.999894	0	0.499519	0.020826	0.001055	
PAIR	802403536	802403536	1.000000	0	799470160	0.996344	118481075249	748783226	111697689132	106949064709	0.000000	0.007619	0.006975	0.000214	151.000000	797526388	0.997569	0	0.499728	0.020239	0.000530