#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP00680/HGDP00680.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00680/QCmetrics/HGDP00680.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.3194	17.352	0	0	0	0.055298	0.0060129	0.08654	0.034655	0.40425	0.58676	0.22264	0.044466	0.028587	0.022545	0.019026	0.016593	0.01469	0.01203	0.010417	0.0093829	0.0085731	0.0079362	0.007399	0.0069253	0.12572	1	

coverage	high_quality_coverage_count	
0	18373930
1	3217803
2	586421
3	245760
4	161435
5	114680
6	90630
7	70535
8	54883
9	44587
10	38530
11	32036
12	27187
13	23727
14	21327
15	19699
16	17901
17	16410
18	15159
19	14005
20	13109
21	11983
22	11298
23	10702
24	10424
25	9973
26	9277
27	9045
28	8452
29	8240
30	7774
31	7545
32	7154
33	6753
34	6362
35	5957
36	5625
37	5500
38	5218
39	4964
40	4665
41	4355
42	4256
43	4086
44	3899
45	3710
46	3575
47	3508
48	3186
49	2893
50	2857
51	2606
52	2575
53	2418
54	2502
55	2333
56	2368
57	2307
58	2321
59	2158
60	2022
61	2015
62	2016
63	2015
64	1988
65	1959
66	1917
67	1737
68	1790
69	1681
70	1613
71	1592
72	1566
73	1584
74	1511
75	1501
76	1482
77	1397
78	1438
79	1370
80	1354
81	1299
82	1277
83	1294
84	1310
85	1269
86	1237
87	1275
88	1170
89	1213
90	1129
91	1142
92	1118
93	1139
94	1165
95	1120
96	1122
97	1174
98	1039
99	1048
100	1030
101	1114
102	1035
103	1037
104	1062
105	992
106	1066
107	1057
108	1075
109	1088
110	970
111	1068
112	1084
113	1067
114	1068
115	1114
116	1016
117	1082
118	1119
119	1102
120	1196
121	1139
122	1139
123	1129
124	1193
125	1232
126	1212
127	1223
128	1237
129	1197
130	1296
131	1201
132	1175
133	1164
134	1169
135	1102
136	1073
137	1067
138	1035
139	1006
140	1000
141	985
142	930
143	967
144	885
145	867
146	845
147	839
148	799
149	808
150	802
151	707
152	760
153	750
154	750
155	769
156	687
157	730
158	695
159	724
160	607
161	623
162	624
163	630
164	583
165	625
166	576
167	578
168	592
169	599
170	566
171	558
172	551
173	543
174	481
175	525
176	499
177	534
178	563
179	530
180	515
181	543
182	557
183	525
184	552
185	530
186	537
187	572
188	591
189	543
190	501
191	512
192	499
193	501
194	488
195	493
196	502
197	508
198	506
199	493
200	453
201	488
202	500
203	470
204	513
205	488
206	436
207	443
208	436
209	353
210	412
211	376
212	406
213	413
214	435
215	431
216	465
217	400
218	426
219	415
220	406
221	420
222	415
223	368
224	418
225	388
226	390
227	337
228	333
229	305
230	322
231	291
232	280
233	290
234	273
235	274
236	257
237	264
238	237
239	250
240	237
241	242
242	236
243	222
244	209
245	233
246	227
247	215
248	198
249	184
250	63624