#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00682/HGDP00682.cram --algo AlignmentStat HGDP/HGDP00682/QCmetrics/HGDP00682.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	414631283	414631283	1.000000	0	413936175	0.998324	61891141586	388237706	58330150987	57001472423	0.000000	0.004854	0.004203	0.000220	151.000000	412589787	0.996747	0	0.499893	0.019345	0.000003	
SECOND_OF_PAIR	414631283	414631283	1.000000	0	412634111	0.995183	60650376491	386135606	57260520927	53690167145	0.000000	0.010563	0.009883	0.000210	151.000000	412589787	0.999893	0	0.499573	0.020414	0.001402	
PAIR	829262566	829262566	1.000000	0	826570286	0.996753	122541518077	774373312	115590671914	110691639568	0.000000	0.007679	0.007016	0.000215	151.000000	825179574	0.998317	0	0.499733	0.019879	0.000703