#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00683/HGDP00683.cram --algo AlignmentStat HGDP/HGDP00683/QCmetrics/HGDP00683.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	385033256	385033256	1.000000	0	384545845	0.998734	57442510291	362380631	54401022776	52928357112	0.000000	0.005139	0.004511	0.000217	151.000000	382974771	0.995914	0	0.500000	0.019755	0.000003	
SECOND_OF_PAIR	385033256	385033256	1.000000	0	383011306	0.994749	56086348712	359989148	53184511567	49479657858	0.000000	0.011025	0.010387	0.000208	151.000000	382974771	0.999905	0	0.499408	0.021169	0.001040	
PAIR	770066512	770066512	1.000000	0	767557151	0.996741	113528859003	722369779	107585534343	102408014970	0.000000	0.008047	0.007416	0.000213	151.000000	765949542	0.997906	0	0.499705	0.020461	0.000521