#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00686/HGDP00686.cram --algo AlignmentStat HGDP/HGDP00686/QCmetrics/HGDP00686.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	415848511	415848511	1.000000	0	413969268	0.995481	61860930868	387359342	58175670369	56805219262	0.000000	0.004914	0.004241	0.000221	151.000000	412342232	0.996070	0	0.499851	0.021472	0.000010	
SECOND_OF_PAIR	415848511	415848511	1.000000	0	412427214	0.991773	60530407138	384950133	57022130370	53451042221	0.000000	0.010203	0.009487	0.000212	151.000000	412342232	0.999794	0	0.499489	0.022934	0.004073	
PAIR	831697022	831697022	1.000000	0	826396482	0.993627	122391338006	772309475	115197800739	110256261483	0.000000	0.007529	0.006838	0.000216	151.000000	824684464	0.997928	0	0.499670	0.022202	0.002042