#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00694/HGDP00694.cram --algo AlignmentStat HGDP/HGDP00694/QCmetrics/HGDP00694.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	395987841	395987841	1.000000	0	395083033	0.997715	59060429002	372310251	55916124682	54562676846	0.000000	0.004918	0.004284	0.000218	151.000000	393790803	0.996729	0	0.500048	0.019100	0.000006	
SECOND_OF_PAIR	395987841	395987841	1.000000	0	393841144	0.994579	57914446181	370303831	54909352500	51640503780	0.000000	0.009690	0.009033	0.000209	151.000000	393790803	0.999872	0	0.499442	0.020297	0.002011	
PAIR	791975682	791975682	1.000000	0	788924177	0.996147	116974875183	742614082	110825477182	106203180626	0.000000	0.007280	0.006637	0.000214	151.000000	787581606	0.998298	0	0.499745	0.019698	0.001009