#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00697/HGDP00697.cram --algo AlignmentStat HGDP/HGDP00697/QCmetrics/HGDP00697.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	458454972	458454972	1.000000	0	456635654	0.996032	68229233125	428315734	64315640090	62724561345	0.000000	0.005052	0.004406	0.000222	151.000000	453805194	0.993801	0	0.499984	0.021139	0.000008	
SECOND_OF_PAIR	458454972	458454972	1.000000	0	453887368	0.990037	66350055338	424433696	62636441888	58202788718	0.000000	0.011568	0.010899	0.000213	151.000000	453805194	0.999819	0	0.499461	0.022728	0.003577	
PAIR	916909944	916909944	1.000000	0	910523022	0.993034	134579288463	852749430	126952081978	120927350063	0.000000	0.008265	0.007610	0.000218	151.000000	907610388	0.996801	0	0.499723	0.021932	0.001792